FBI agent Olivia Dunham and John Scott are travelling to Germany for an important mission. Unfortunately, John Scott, got severe chemical burns, and FBI Dunham needs to get him really well, quick, as they are in a time sensitive mission. She later on, had to contact Doctor Bishop, who is the specialist for such chemical burns, in spite of him having been institutionalized, FBI Dunham knew he was the only person who can cure John. She had to work with Doctor Bishop’s son, Peter to eventually cure Scott.

Later on towards the season, they discovered that the chemical severe burns, is caused by a scientific phenomena, caused by Doctor Bishop’s colleague, and they are out of discovering what he is up to.
| Episode No | Episode Title | Director By | Air Date |
|---|---|---|---|
| Episode 1 | "Pilot" | Alex Graves | 9-Sep-08 |
| Episode 2 | "The Same Old Story" | Paul Edwards | 16-Sep-08 |
| Episode 3 | "The Ghost Network" | Frederick E.O. Toye | 23-Sep-08 |
| Episode 4 | "The Arrival" | Paul Edwards | 30-Sep-08 |
| Episode 5 | "Power Hungry" | Christopher Misiano | 14-Oct-08 |
| Episode 6 | "The Cure" | Bill Eagles | 21-Oct-08 |
| Episode 7 | "In Which We Meet Mr. Jones" | Brad Anderson | 11-Nov-08 |
| Episode 8 | "The Equation" | Gwyneth Horder-Payton | 18-Nov-08 |
| Episode 9 | "The Dreamscape" | Frederick E.O. Toye | 25-Nov-08 |
| Episode 10 | "Safe" | Michael Zinberg | 2-Dec-08 |
| Episode 11 | "Bound" | Frederick E.O. Toye | 20-Jan-09 |
| Episode 12 | "The No-Brainer" | John Polson | 27-Jan-09 |
| Episode 13 | "The Transformation" | Brad Anderson | 3-Feb-09 |
| Episode 14 | "Ability" | Norberto Barba | 10-Feb-09 |
| Episode 15 | "Inner Child" | Frederick E.O. Toye | 7-Apr-09 |
| Episode 16 | "Unleashed" | Brad Anderson | 14-Apr-09 |
| Episode 17 | "Bad Dreams" | Akiva Goldsman | 21-Apr-09 |
| Episode 18 | "Midnight" | Bobby Roth | 28-Apr-09 |
| Episode 19 | "The Road Not Taken" | Frederick E.O. Toye | 5-May-09 |
| Episode 20 | "There’s More Than One of Everything" | Brad Anderson | 12-May-09 |
